Routine silvicultural practices continue to alter the structure and composition of forests after logging by removing deciduous vegetation from regenerating coniferous forests. We identified nest trees and surveyed vegetation in a 5 m radius surrounding songbird nests (nest patch) and compared the nest patches to available habitat in nine 11–22 year old conifer plantations (22–47 ha) where 90–96% of deciduous stems were removed by two treatments: manual thinning, and manual thinning plus application of glyphosate (herbicide). The control and two treatments were replicated three times. We characterized the nest patches of five species: Warbling Vireo (Vireo gilvus), Dusky Flycatcher (Empidonax oberholseri), Swainson's Thrush (Catharus ustulatus), American Robin (Turdus migratorius), and Chipping Sparrow (Spizella passerina). During three post-treatment years, areas treated with thinning plus herbicide remained depauperate of deciduous vegetation whereas thinned sites experienced deciduous regrowth. Despite variation in the density of deciduous trees and in the type of tree used for nesting in the control and treatments, nest patches were positively correlated with the amount of remaining deciduous vegetation, representing habitat that either escaped or recovered from silvicultural treatments. That relationship was stronger in areas with the fewest deciduous trees. Nests were more likely to be successful in areas with more willow. Within a mosaic of managed forest stands, birds appear to use the same proximate habitat cues for selecting a nest patch despite varying fitness consequences across different silviculture regimes. Although birds appeared to compensate for changes in stand habitat by finding patches of untreated vegetation or altering the type of tree they nested in, there was a reproductive cost for some species.